Usually it is measured from the leading edge to the trailing edge (where it was before you added the flap) as the "zero AOA" line. Some airfoil designers have used different conventions but the NACA series all use this convention. When you modified the camber, you moved the lift curve up and to the left. You will now stall it out at a lower AOA, but you have more lift at a lower AOA too.
The Lift Coefficient for a wing is lower than for an airfoil (infinite span wing), but your wing looks to have an aspect ratio (span/chord) of 8-10 or so, so the difference will not be too large, and if you have endplates, that will help even more.
Also, while 1,000,000 is not a bad estimate for your Reynold's Number, it would really be closer to 725,000 at 130 mph, so if the data is available at 500,000 or 750,000, you would be better off using that data. Airfoil data is normally not available at a large number of Reynold's numbers, and I am somewhat surprised you got any at 1,000,000, as it usually starts about 2,000,000.
Looking at the airfoil data, you should be able to cut the lift in half on the straights and cut the drag to 1/3 or so of what it is at max lift (might only be 1/2 after adding drag from the uprights and end plates). However, this is probably worth the effort as at this speed (130 mph ~190 ft/s) every 3 lb of drag is about 1 horsepower required (power required = drag(in lbs) * speed (in ft/s) / (550 lb*ft/s)/hp). So, if your wing is 400 lb of downforce, and taking into account some fudging for the uprights, etc, you probably have about 20-30 lb of drag, consuming about 10 horsepower, just for the wing. You could potentially cut that about in half, so that should be worth a little bit of top speed on the straights. You might also consider a notch at about 7 degrees AOA, as that would seem to be where the Lift/Drag is maximized. If you want to find the right location, find where Cl/Cd is highest (use excel or something else to calculate it based on the data in the curves, or you can draw a line from 0 CL and 0 CD to the point where it is tangent to the Cl v. Cd curve and that will be pretty much the right location. The endplates will also help prevent "induced drag" which is the drag induced by making lift on a finite wing--there is spillage over the tips, creating vortices, and adding drag while reducing lift--the airfoil curves only include "pressure drag" which is just due to the 2-D pressure distribution about the airfoil, creating both lift and drag, but this also includes the normal viscous drag.
Overall, depending on the exact aspect ratio, and the effectiveness of your end plates, you can probably count on about 90+% of the lift/down force you are calculating from the airfoil data, and about 150-200% of the drag. However, the trends will still hold pretty close.