Tim,
I'm no expert on concrete porosity ... I epoxy'ed my floor this past weekend, here's what I did and it seemed to work fine: I filled the joints with screen spline before acid etching. Yes, screen spline, not backer rod -- see my other post on this. The screen spline did not seem to be affected by the acid at all, and it kept the joints from filling up with acid & rinse water. The whole floor dried quickly after triple rinsing (regular garden hose, NOT a pressure washer). I used my shop vac to **** the water out of the joints, but honestly there wasn't that much there, it would have dried on its own in a few hours (it was about 85 deg and fairly low humidity here). Next day, I put down the epoxy, and haven't seen any problems so far. I set the screen spline about 1/8 - 1/4" below the surface on the floor, so I didn't waste much epoxy (if you don't fill the joints before epoxying, I think you'll lose a fair amount of expensive product down in the joints, esp if you have an open crack at the bottom of a joint). I plan to caulk the joints in a few days to bring them up level with the floor.