The green lead held next to a spark plug wire will pick up a secondary pattern just fine. It just doesn't have the safety clip. Hold a lead near a plug wire, lay it on, gators, etc Set the scales with 1 volt vertical height top to bottom, so on a uscope 0.1v/division. You'll see a tiny little secondary pattern.
Yes, if ignition coil secondary output gets fired into the scope, it's over for that channel at a minimum. The smart move is using leads with the clips on them for secondary, offering an alternate path to ground. I have more secondary leads than inputs on my scope. But, yeah, in a pinch you can just toss a gator on there lightly for a sync, or even diagnostic with a scope with a big zoom or tight scales. If you need to invert, just swap the banana jacks around.