Do you have 3 runs of the same color/size THHN? Or some other kind of wire?
You can figure it out by tying 2 of the wires together at one end and doing a continuity check; this will ID one of the wires (the one with no continuity).
Label the one wire with no continuity at both ends.
Then take one of the 2 wires you tied together previously and tie it to the wire you identified. Ring it out again and mark the unlabeled conductor at both ends..
You now you have 2 out of 3 labeled...
Hopefully my description isn't too confusing!
you can also use a toner if you have access:
http://www.amazon.com/dp/B0042VII84/?tag=atomicindus08-20
Edit: I type too slow... Looks like Lotek covered it if all you want to ID is the neutral..