I like the primary/secondary systems as well. It took me a while get my head around the concept. I finally looked at as the secondary loop "stealing heated water" from the primary loop. You don't want all the heat to be "stolen" just enough to get the input temps to the floor you are designing.
I actually put flow indicators on my primary and secondary loops. They are nothing more than propellers that spin acording to flow. They have sight glasses that let you see how fast the water is moving in each loop. The primary loop, the loop that comes out and into the boiler spins very fast. The secondary loop, the floor loop, moves at a very slow speed in comparison. In my opinion thise things should be manditory for hot water systems. You can see instantly if you have water circulating as it should be. You can also see the condition of the water as well. After you have varified that you have flow, you can start using your temperature gun to dial in you system.
As boiler mentioned, you should get assistance from the pro's. Doing the work is the fun part anyways.