"the left and right "bars" are bonded by a single black wire near the top"
Yes, the two sides are bonded, and I intend to leave it that way. The plan now is to install a new ground bar near the top left side of the panel box. With the house de-energized, I'll pull all the grounds of the the two existing bars and route them toward the top of the panel and over to the new ground bar. All but a few wires should be long enough.
"I see 1 solid #6 entering this panel. this needs to be moved to the TS"
That is on the to-do list for the day the house is de-energized. There's a convenient spot inside the transfer switch for the ground.
Now my next question...
While nowhere close to complete, my generator install project is looking better. I have a plumber lined up to do the gas line. Given where the gas meter and generator are located, the plumber said it would be an hour long job, tops. The problem is he won’t have that hour until early September.
The question…Is it a bad idea to get all the electrical work done before the gas line is installed? I’d hate to just sit around for the next 3-4 weeks and not get anything else on the project completed.
In the next week or so, I plan to have the house de-energized for the task of isolating/moving the grounds (not keen about moving 30+ pieces of bare copper in an electrified panel). I figure that will take me 2-3 hours to accomplish; and another hour or 2 to run the new service entry cable from the meter to the transfer switch and finish connecting the conductors from the transfer switch to the main panel.
To accomplish this, I’ll take a day off and schedule AEP to pull the meter early in the day and (if all goes to plan) the job will be done by the afternoon for AEP to come back and plug the meter back in.
Also, for those of you concerned about my conduit faux pas, it's all good now. Actually, it all went bad, but it's good now. Despite the Generac instructions stating the transfer panel can handle 4/0 wire, turns out the generator can only handle 2/0. So the weekend worth of frustration, sweat and most of $200 spent on 4/0 wire was all for nothing.
After pulling the 4/0 wire out and re-doing parts of the conduit, I ordered an engineered cable from Zillerelectric.com and this weekend will be pulling it though and connecting it.