Well, I guess I should have said "except for a rafter tie running the right way". It's easy to connect rafters to that, but quite difficult to catch the wall. The bolt is a great idea, and I've used a few (not on every rafter). They're immune to all the night/day expansion cycles decade after decade.
We normally have to bolt every rafter to the tie, it makes it much slower however as you have to place the rafter, drill it, separate them to get the spiked washer in, tighten the bolt then nail the rafter in, especially with them on 400mm centres (16").
It is a building regulation requirement for cut roofs.
The wall is usually masonry so we are only nailing to a 2x4 plate bedded on to the blocks, the plate gets strapped to the wall to hold the roof on against the wind loads, or you strap the rafters down to the wall, normally 4' or so down with lots of fixings, the wall is just sat on the foundation, our wind loadings are not severe enough in most areas to require more (for houses)
Trusses are the dominant system nowadays, I have met carpenters who have never done a cut roof.