Gotcha. You won't be looking so much for known good, as odd man out in such an example. Relative compression for example, the rough rule of thumb I use is 35amps peak to peak minimum. But frankly I don't care all that much. If one has two cylinders, with identical current required to take the piston to TDC compression, and only one is misfiring, one could surmise that compression is not the contributing factor to the reason cylinder A is misfiring but cylinder B is not. If both have "identical" compression "numbers", one would believe that compression that would serve as sufficent for combustion on cylinder B would certainly support combustion on cylinder A. Thus the problem lies elsewhere. Now, you have a 4 cylinder engine, and the pattern looks like " ^^^-^^^-^^^-^^^-^^^-^^^- " well you have a dead hole.
Connect the scope into the circuit with either a standard backprobe, or T-pin and alligator clip, and so long as your connections are properly secure, the patterns will be functionally identical. As a side note, compare the speed at which your compensation signal was produced at, vs a secondary ignition pattern which has a 2ms max burn time, usually less than 1.5ms. You may be running at a super high frequency above and beyond what you will be sampling. We don't care about impedance, it's DC anyways and I actually had to look up the impedance formula to confirm before writing this. We don't care about probe resistance, we're not measuring resistance and so long as our scope has proper voltage limits (or we are attenuating to said limits) the lead is simply a dead branch off of the circuit. Attenuation factors are based on the scope, for instance the scope linked above has a 35v max input. So for primary ignition or injector voltage, you'll need to attenuate. A quality attenuator will take 12.5 volts, and at 10:1 show 1.25v. Now on an 80v inductive kick, yes, we might be stuck with 7.9v on our scope. But again we're comparing the shapes and consistences, as well as mainly looking for a pintle hump in that example.
I guess long story short is - hook the lead to the circuit however you like, for what you will be measuring it's not relevant. Now, if the input voltage of the scope is 35v max, you better have an attenuator on there when you plug into the ground side of an injector or coil.