If the stain didnt get into the chips, then you need to lightly sand with 36 grit paper, use a lightly damped rag with xylene, make sure its completely dry, then reaply your top coat.
if the chips are staind as well, lightly sand with 36 grit paper, use a lightly damped rag with xylene, make sure its completely dry, apply epoxy and rebroadcast your chips. Wait until next day, scrape the chips that didnt bond, apply a clear epoxy, then wait till next day and topcoat.
ofcourse this process could be sped up dramatically with the use of polyaspartics but being a DIY'r, you might not have access to it.