I had made a mistake and installed the clutch shaft in the wrong order, so I've edited this post to reflect the proper order of assembly.

The next item to go back into gear box is the cone gear stack

I used some Vee blocks to support the shaft so I could use a soft blow mallet to tap the 3/16" key back in. I then slid the center gear spacer onto the shaft.

Here it is all laid out. Note, there is 7 gears to the left of the shaft spacer plus the large bearing spacer. To the right of the shaft spacer is the the 4 larger gears plus the thinner bearing washer.

The gears were difficult to slide back on to the shaft. When I inspected them I realized they all had small burrs on the inside edges, so I deburrred all of them.

Notice the raised center section of the gears. They all have these on both sides, except the two on either side of the center shaft spacer (non raised side goes next to it) and the smallest and larges gear also lack them on the sides next to the bearing spacers.

I lubed everything with the heavy-medium oil and slid all of the gears on the left side of the shaft spacer on to the shaft. The smallest gear needs to sit dead flush with the shoulder on the shaft.

The large bearing spacer then slides on with the smallest side facing out.

I then inserted the partial cone gear stack into the front of the gear box and slide it to the full left side of its bore.

The right side bearing stack then gets slid on one at a time followed by the thin bearing spacer.

The cone gear shaft uses a new Departure 3204 bearing on the right side these are open sided bearings. It used a C8504 on the left side. This is the same OD and ID as the the 3204 but has a raised center section on shield on the external side. I couldn't find a replacement for the C8504 as these are both non-metric bearings. Luckily the new old stock3204 bearings will work here as the bearing retainer locates the bearing by the outer edge and not the center.